Strong Attractions and Repulsions Mediated by Monovalent Salts Supporting Information Appendix
نویسندگان
چکیده
The ion-ion radial distribution functions used in the Iterative Boltzmann Inversion (see main text and the section 2 of this SI Appendix) are calculated from atomistic simulations of NaCl-water solutions. Periodic boundary conditions (PBC) are applied on the x-, yand zdimensions of a 5 nm × 5 nm × 5 nm simulation box. NaCl concentrations from 0.3 M to 1 M are simulated. The number of water molecules in the simulation box range from 4131 to 3575 depending on NaCl concentration. Particle Mesh Ewald (PME) method (1) is applied to treat the electrostatic interaction beyond the cutoff of 1.2 nm. The simulation timestep is 1 fs. The systems are equilibrated at a constant pressure of 1 atm for 5 ns before collecting data. Two water models are studied: the TIP3P model and SPC/E model. The systems with TIP3P water model are simulated using NAMD (2) which is optimized for TIP3P water model, and the systems with SPC/E are simulated using GROMACS (3).
منابع مشابه
Strong attractions and repulsions mediated by monovalent salts.
Controlling interactions between proteins and nanoparticles in electrolyte solutions is crucial for advancing biological sciences and biotechnology. The assembly of charged nanoparticles (NPs) and proteins in aqueous solutions can be directed by modifying the salt concentration. High concentrations of monovalent salt can induce the solubilization or crystallization of NPs and proteins. By using...
متن کاملEffect of mono- and multivalent salts on angle-dependent attractions between charged rods.
Using molecular dynamics simulations we examine the effective interactions between two like-charged rods as a function of angle and separation. In particular, we determine how the competing electrostatic repulsions and multivalent-ion-induced attractions depend upon concentrations of simple and multivalent salts. We find that with increasing multivalent salt, the stable configuration of two rod...
متن کاملDNA like-charge attraction and overcharging by divalent counterions in the presence of divalent co-ions.
Strongly correlated electrostatics of DNA systems has drawn the interest of many groups, especially the condensation and overcharging of DNA by multivalent counterions. By adding counterions of different valencies and shapes, one can enhance or reduce DNA overcharging. In this paper, we focus on the effect of multivalent co-ions, specifically divalent co-ions such as SO[Formula: see text]. A co...
متن کاملEffects of Intrachain Interactions on the Knot Size of a Polymer
Knots occur frequently in our daily life and also in long polymers. Studies of spontaneously occurring knots in a linear polymer have focused on their size and probabilities. In this work, we report counterintuitive phenomena about knot sizes and explain them by an analytic theory. Our simulations show that short-range intrachain attractions (repulsions) lead to shrinking (swelling) of knot siz...
متن کاملAttitude toward migrate abroad in Iranian medical community: a qualitative study
Intellectual and human capital is one of the main foundations of the countries' growth and development, and the lack of such capital makes development process difficult. The migration of specialists and scientists and its trend as elite migration, especially the migration of physicians, is one of the problems that has plagued the scientific management policy of many countries around the worl...
متن کامل